ELIXIR Norway hosts analysis workflows for SARS-CoV-2 sequence data
In the writing moment 414 complete SARS-CoV-2 genome sequences are accessible in NCBI and many more are being sequenced world-wide. In addition, the sequence data is being made publicly available.
ELIXIR Norway has made available SARS-CoV-2 analysis workflows in Galaxy for both pre-processing of raw Illumina data and for variant analysis of SARS-CoV-2 sequence reads against a complete reference genome. The workflows are available at the NeLS Galaxy instance hosted at NTNU.
The following workflows are now available:
- Pre-processing multiple PE samples
- Pre-processing single PE samples
- Single nucleotide variation analysis
For help or questions regarding the analysis workflows, please contact the national ELIXIR helpdesk: firstname.lastname@example.org