Description
Data on three-dimensional structures of biological macromolecules including proteins and nucleic acids, determined from electro density distribution from X-ray diffraction patterns.
Type of data/experiments/methods
Diffraction patterns
- Tagged Image File Format
- Open Format
Archiving format for macromolecule crystallographic experiments and results
Metadata Standards
Crystallographic Information Framework
Dictionaries
- Core mmcif Dictionary
- PDB mmCIF Extension (PDBX) Dictionary
- 3D EM Extension Dictionary to describe structures and experimental data produced by 3D Electron Microscopy experiments
Sources for Reusable Data
Protein Data Bank in Europe
- CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
- Identifiers: doi, accession number
- How to access: open access; REST API, Websearch
Storage and Computing
Data Deposition Repository
Protein Data Bank in Europe
- CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
- Identifiers: doi, accession number
- How to submit data to PDBe
- Embargo: up to one year from the date of deposition
Integrated Resource for Reproducibility in Macromolecular Crystallography
- CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
- Identifiers: doi, accession number
- How to submit data to proteindiffraction.org
- Embargo: Will be released when the PDB deposit is released. RCSB will link the PDB deposit with uploaded data sets.
Services in Norway
RDM Services
- ELIXIR Helpdesk
- Support on structural biology data analysis, bioinformatics and data management
- Contact Information
Scientific Services
- NORCRYST
- Diverse services in crystallography are available at all nodes (UiT, UiO, Uib, NMBU)
- Contact Information
Useful Links
More information
Links to other ELIXIR resources
Lead
Computational Biology Unit, University of Bergen